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| 2024-10-29 | Rapid SARS-CoV-2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change [METHODS] | Narechania, A., Bobo, D., Deitz, K., DeSalle, R., Planet, P. J., Mathema, B. | |
| 2024-10-29 | Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis [METHODS] | Derelle, R., von Wachsmann, J., Mäklin, T., Hellewell, J., Russell, T., Lalvani, A., Chindelevitch, L., Croucher, N. J., Harris, S. R., Lees, J. A. | |
| 2024-10-29 | Contrasting and combining transcriptome complexity captured by short and long RNA sequencing reads [METHODS] | Han, S. W., Jewell, S., Thomas-Tikhonenko, A., Barash, Y. | |
| 2024-10-29 | Theoretical framework for the difference of two negative binomial distributions and its application in comparative analysis of sequencing data [METHODS] | Petrany, A., Chen, R., Zhang, S., Chen, Y. | |
| 2024-10-29 | Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements [RESEARCH] | Valentin-Alvarado, L. E., Shi, L.-D., Appler, K. E., Crits-Christoph, A., De Anda, V., Adler, B. A., Cui, M. L., Ly, L., Leao, P., Roberts, R. J., Sachdeva, R., Baker, B. J., Savage, D. F., Banfield, J. F. | |
| 2024-10-29 | Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories [METHODS] | Hristov, B. H., Noble, W. S., Bertero, A. | |
| 2024-10-29 | PWAS Hub for exploring gene-based associations of common complex diseases [RESOURCES] | Kelman, G., Zucker, R., Brandes, N., Linial, M. | |
| 2024-10-29 | Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level [RESOURCES] | Deng, W., Citu, C., Liu, A., Zhao, Z. | |
| 2024-10-29 | AGAP duplicons associate with structural diversity at Chromosome 10q11.22 [RESEARCH] | Fornezza, S., Delvecchio, V. S., Harvey, W. T., Dishuck, P. C., Eichler, E. E., Giannuzzi, G. | |
| 2024-10-29 | Evolutionary dynamics of polyadenylation signals and their recognition strategies in protists [RESEARCH] | Sajek, M. P., Bilodeau, D. Y., Beer, M. A., Horton, E., Miyamoto, Y., Velle, K. B., Eckmann, L., Fritz-Laylin, L., Rissland, O. S., Mukherjee, N. | |
| 2024-10-29 | De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome reshuffling and uncover novel 3D genome folding in amniotes [RESEARCH] | Bista, B., Gonzalez-Rodelas, L., Alvarez-Gonzalez, L., Wu, Z.-q., Montiel, E. E., Lee, L. S., Badenhorst, D. B., Radhakrishnan, S., Literman, R., Navarro-Dominguez, B., Iverson, J. B., Orozco-Arias, S., Gonzalez, J., Ruiz-Herrera, A., Valenzuela, N. | |
| 2024-10-29 | Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain [RESEARCH] | Shepherdson, J. L., Granas, D. M., Li, J., Shariff, Z., Plassmeyer, S. P., Holehouse, A. S., White, M. A., Cohen, B. A. | |
| 2024-10-29 | Evidence for compensatory evolution within pleiotropic regulatory elements [RESEARCH] | Kliesmete, Z., Orchard, P., Lee, V. Y. K., Geuder, J., Krauss, S. M., Ohnuki, M., Jocher, J., Vieth, B., Enard, W., Hellmann, I. | |
| 2024-10-29 | Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer [RESEARCH] | Song, Y., Li, F., Wang, S., Wang, Y., Lai, C., Chen, L., Jiang, N., Li, J., Chen, X., Bailey, S. D., Zhang, X. | |
| 2024-10-29 | Targeted and complete genomic sequencing of the major histocompatibility complex in haplotypic form of individual heterozygous samples [RESEARCH] | Hu, T., Mosbruger, T. L., Tairis, N. G., Dinou, A., Jayaraman, P., Sarmady, M., Brewster, K., Li, Y., Hayeck, T. J., Duke, J. L., Monos, D. S. | |
| 2024-10-29 | Global characterization of somatic mutations and DNA methylation changes during vegetative propagation in strawberries [RESEARCH] | Hu, S., Zeng, X., Liu, Y., Li, Y., Qu, M., Jiao, W.-B., Han, Y., Kang, C. | |
| 2024-10-29 | The chromatin tapestry as a framework for neurodevelopment [MINI-REVIEW] | Nolan, B., Reznicek, T. E., Cummings, C. T., Rowley, M. J. | |
| 2024-10-11 | A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data [METHOD] | Park, C., Mani, S., Beltran-Velez, N., Maurer, K., Huang, T., Li, S., Gohil, S., Livak, K. J., Knowles, D. A., Wu, C. J., Azizi, E. | |
| 2024-10-11 | Bayesian inference of sample-specific coexpression networks [METHOD] | Saha, E., Fanfani, V., Mandros, P., Ben Guebila, M., Fischer, J., Shutta, K. H., DeMeo, D. L., Lopes-Ramos, C. M., Quackenbush, J. | |
| 2024-10-11 | Accurate assembly of circular RNAs with TERRACE [METHOD] | Zahin, T., Shi, Q., Zang, X. C., Shao, M. | |
| 2024-10-11 | Spatial Cellular Networks from omics data with SpaCeNet [METHOD] | Schrod, S., Lück, N., Lohmayer, R., Solbrig, S., Völkl, D., Wipfler, T., Shutta, K. H., Ben Guebila, M., Schäfer, A., Beissbarth, T., Zacharias, H. U., Oefner, P. J., Quackenbush, J., Altenbuchinger, M. | |
| 2024-10-11 | Memory-bound k-mer selection for large and evolutionarily diverse reference libraries [METHOD] | Sapcı, A. O. B., Mirarab, S. | |
| 2024-10-11 | Haplotype-aware sequence alignment to pangenome graphs [METHOD] | Chandra, G., Gibney, D., Jain, C. | |
| 2024-10-11 | Privacy-preserving biological age prediction over federated human methylation data using fully homomorphic encryption [METHOD] | Goldenberg, M., Mualem, L., Shahar, A., Snir, S., Akavia, A. | |
| 2024-10-11 | Protein domain embeddings for fast and accurate similarity search [METHOD] | Iovino, B. G., Tang, H., Ye, Y. | |
| 2024-10-11 | Matrix sketching framework for linear mixed models in association studies [METHOD] | Burch, M., Bose, A., Dexter, G., Parida, L., Drineas, P. | |
| 2024-10-11 | Secure discovery of genetic relatives across large-scale and distributed genomic data sets [METHOD] | Hong, M. M., Froelicher, D., Magner, R., Popic, V., Berger, B., Cho, H. | |
| 2024-10-11 | A scalable adaptive quadratic kernel method for interpretable epistasis analysis in complex traits [METHOD] | Fu, B., Anand, P., Anand, A., Mefford, J., Sankararaman, S. | |
| 2024-10-11 | Scalable summary-statistics-based heritability estimation method with individual genotype level accuracy [METHOD] | Jeong, M., Pazokitoroudi, A., Liu, Z., Sankararaman, S. | |
| 2024-10-11 | Genetics-driven risk predictions leveraging the Mendelian randomization framework [METHOD] | Sens, D., Shilova, L., Gräf, L., Grebenshchikova, M., Eskofier, B. M., Casale, F. P. | |
| 2024-10-11 | Designing realistic regulatory DNA with autoregressive language models [METHOD] | Lal, A., Garfield, D., Biancalani, T., Eraslan, G. | |
| 2024-10-11 | Size-based expectation maximization for characterizing nucleosome positions and subtypes [METHOD] | Yang, J., Yen, K., Mahony, S. | |
| 2024-10-11 | A best-match approach for gene set analyses in embedding spaces [METHOD] | Li, L., Dannenfelser, R., Cruz, C., Yao, V. | |
| 2024-10-11 | CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing [METHOD] | Zhu, K., Jones, M. G., Luebeck, J., Bu, X., Yi, H., Hung, K. L., Wong, I. T.-L., Zhang, S., Mischel, P. S., Chang, H. Y., Bafna, V. | |
| 2024-10-11 | Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction [METHOD] | Zeng, S., Wang, D., Jiang, L., Xu, D. | |
| 2024-10-11 | Reconstructing extrachromosomal DNA structural heterogeneity from long-read sequencing data using Decoil [METHOD] | Giurgiu, M., Wittstruck, N., Rodriguez-Fos, E., Chamorro Gonzalez, R., Brückner, L., Krienelke-Szymansky, A., Helmsauer, K., Hartebrodt, A., Euskirchen, P., Koche, R. P., Haase, K., Reinert, K., Henssen, A. G. | |
| 2024-10-11 | Graph-based self-supervised learning for repeat detection in metagenomic assembly [METHOD] | Azizpour, A., Balaji, A., Treangen, T. J., Segarra, S. | |
| 2024-10-11 | Innovations in computational biology: RECOMB 2024 Special Issue [EDITORIAL] | Ma, J., Berger, B. | |
| 2024-09-26 | Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize [RESOURCES] | Tibbs-Cortes, L. E., Guo, T., Andorf, C. M., Li, X., Yu, J. | |
| 2024-09-26 | Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs [RESOURCES] | Anderson, A. G., Moyers, B. A., Loupe, J. M., Rodriguez-Nunez, I., Felker, S. A., Lawlor, J. M. J., Bunney, W. E., Bunney, B. G., Cartagena, P. M., Sequeira, A., Watson, S. J., Akil, H., Mendenhall, E. M., Cooper, G. M., Myers, R. M. | |
| 2024-09-26 | A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types [RESOURCES] | Peng, F., Nordgren, C. E., Murray, J. I. | |
| 2024-09-26 | Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries [METHODS] | Wiens, M., Farahani, H., Scott, R. W., Underhill, T. M., Bashashati, A. | |
| 2024-09-26 | Genetic complexity of killer-cell immunoglobulin-like receptor genes in human pangenome assemblies [METHODS] | Hung, T.-K., Liu, W.-C., Lai, S.-K., Chuang, H.-W., Lee, Y.-C., Lin, H.-Y., Hsu, C.-L., Chen, C.-Y., Yang, Y.-C., Hsu, J. S., Chen, P.-L. | |
| 2024-09-26 | A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data [METHODS] | Chen, S., Wang, J., Jung, I., Qiu, Z., Gao, X., Li, Y. | |
| 2024-09-26 | A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma [METHODS] | Müller, J., Hartwig, C., Sonntag, M., Bitzer, L., Adelmann, C., Vainshtein, Y., Glanz, K., Decker, S. O., Brenner, T., Weber, G. F., von Haeseler, A., Sohn, K. | |
| 2024-09-26 | A simple method for finding related sequences by adding probabilities of alternative alignments [METHODS] | Frith, M. C. | |
| 2024-09-26 | Colibactin leads to a bacteria-specific mutation pattern and self-inflicted DNA damage [RESEARCH] | Lowry, E., Wang, Y., Dagan, T., Mitchell, A. | |
| 2024-09-26 | Differences in activity and stability drive transposable element variation in tropical and temperate maize [RESEARCH] | Ou, S., Scheben, A., Collins, T., Qiu, Y., Seetharam, A. S., Menard, C. C., Manchanda, N., Gent, J. I., Schatz, M. C., Anderson, S. N., Hufford, M. B., Hirsch, C. N. | |
| 2024-09-26 | Genome-wide patterns of selection-drift variation strongly associate with organismal traits across the green plant lineage [RESEARCH] | Uthanumallian, K., Del Cortona, A., Coelho, S. M., De Clerck, O., Duchene, S., Verbruggen, H. | |
| 2024-09-26 | Widespread natural selection on metabolite levels in humans [RESEARCH] | Timasheva, Y., Lepik, K., Liska, O., Papp, B., Kutalik, Z. | |
| 2024-08-21 | Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana [RESOURCES] | Denyer, T., Wu, P.-J., Colt, K., Abramson, B. W., Pang, Z., Solansky, P., Mamerto, A., Nobori, T., Ecker, J. R., Lam, E., Michael, T. P., Timmermans, M. C. P. | |
| 2024-08-21 | Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs [METHODS] | Kuronen, J., Horsfield, S. T., Pöntinen, A. K., Mallawaarachchi, S., Arredondo-Alonso, S., Thorpe, H., Gladstone, R. A., Willems, R. J. L., Bentley, S. D., Croucher, N. J., Pensar, J., Lees, J. A., Tonkin-Hill, G., Corander, J. | |
| 2024-08-21 | Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes [RESOURCES] | Xiang, G., He, X., Giardine, B. M., Isaac, K. J., Taylor, D. J., McCoy, R. C., Jansen, C., Keller, C. A., Wixom, A. Q., Cockburn, A., Miller, A., Qi, Q., He, Y., Li, Y., Lichtenberg, J., Heuston, E. F., Anderson, S. M., Luan, J., Vermunt, M. W., Yue, F., | |
| 2024-08-21 | Delineating yeast cleavage and polyadenylation signals using deep learning [METHODS] | Stroup, E. K., Ji, Z. | |
| 2024-08-21 | Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences [METHODS] | Xu, C., Bao, S., Wang, Y., Li, W., Chen, H., Shen, Y., Jiang, T., Zhang, C. | |
| 2024-08-21 | A gene regulatory network-aware graph learning method for cell identity annotation in single-cell RNA-seq data [METHODS] | Zhao, M., Li, J., Liu, X., Ma, K., Tang, J., Guo, F. | |
| 2024-08-21 | CodonBERT large language model for mRNA vaccines [METHODS] | Li, S., Moayedpour, S., Li, R., Bailey, M., Riahi, S., Kogler-Anele, L., Miladi, M., Miner, J., Pertuy, F., Zheng, D., Wang, J., Balsubramani, A., Tran, K., Zacharia, M., Wu, M., Gu, X., Clinton, R., Asquith, C., Skaleski, J., Boeglin, L., Chivukula, S., | |
| 2024-08-21 | High-fidelity, large-scale targeted profiling of microsatellites [METHODS] | Loh, C. A., Shields, D. A., Schwing, A., Evrony, G. D. | |
| 2024-08-21 | The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution [RESEARCH] | Li, X., Mank, J. E., Ban, L. | |
| 2024-08-21 | The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores [RESEARCH] | Liu, Y., Zhai, G., Su, J., Gong, Y., Yang, B., Lu, Q., Xi, L., Zheng, Y., Cao, J., Liu, H., Jin, J., Zhang, Z., Yang, Y., Zhu, X., Wang, Z., Gong, G., Mei, J., Yin, Z., Gozlan, R. E., Xie, S., Han, D. | |
| 2024-07-24 | Corrigendum: Centromere RNA is a key component for the assembly of nucleoproteins at the nucleolus and centromere [CORRIGENDUM] | Wong, L. H., Brettingham-Moore, K. H., Chan, L., Quach, J. M., Anderson, M. A., Northrop, E. L., Hannan, R., Saffery, R., Shaw, M. L., Williams, E., Choo, K. H. A. | |
| 2024-07-24 | DEAD box RNA helicases are pervasive protein kinase interactors and activators [RESOURCES] | Hirth, A., Fatti, E., Netz, E., Acebron, S. P., Papageorgiou, D., Svorinic, A., Cruciat, C.-M., Karaulanov, E., Gopanenko, A., Zhu, T., Sinning, I., Krijgsveld, J., Kohlbacher, O., Niehrs, C. | |
| 2024-07-24 | Global compositional and functional states of the human gut microbiome in health and disease [RESOURCES] | Lee, S., Portlock, T., Le Chatelier, E., Garcia-Guevara, F., Clasen, F., Onate, F. P., Pons, N., Begum, N., Harzandi, A., Proffitt, C., Rosario, D., Vaga, S., Park, J., von Feilitzen, K., Johansson, F., Zhang, C., Edwards, L. A., Lombard, V., Gauthier, F. | |
| 2024-07-24 | Accurate estimation of pathway activity in single cells for clustering and differential analysis [METHODS] | Davis, D., Wizel, A., Drier, Y. | |
| 2024-07-24 | Accurate allocation of multimapped reads enables regulatory element analysis at repeats [METHODS] | Morrissey, A., Shi, J., James, D. Q., Mahony, S. | |
| 2024-07-24 | Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine [METHODS] | Yan, B., Wang, D., Ettwiller, L. | |
| 2024-07-24 | Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters [METHODS] | Ulrich, J.-U., Renard, B. Y. | |
| 2024-07-24 | Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States [RESEARCH] | Bellinzona, G., Nardi, T., Castelli, M., Batisti Biffignandi, G., Adjou, K., Betson, M., Blanchard, Y., Bujila, I., Chalmers, R., Davidson, R., D'Avino, N., Enbom, T., Gomes, J., Karadjian, G., Klotz, C., Östlund, E., Plutzer, J., Rimhanen-Fin | |
| 2024-07-24 | Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins [RESEARCH] | Vakirlis, N., Kupczok, A. | |
| 2024-07-24 | Causes and consequences of a complex recombinational landscape in the ant Cardiocondyla obscurior [RESEARCH] | Errbii, M., Gadau, J., Becker, K., Schrader, L., Oettler, J. | |
| 2024-07-24 | Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles [RESEARCH] | Wang, X., Heckel, G. | |
| 2024-07-24 | Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue [RESEARCH] | Venkat, A., Carlino, M. J., Lawton, B. R., Prasad, M. L., Amodio, M., Gibson, C. E., Zeiss, C. J., Youlten, S. E., Krishnaswamy, S., Krause, D. S. | |
| 2024-07-24 | Single-cell discovery of m6A RNA modifications in the hippocampus [RESEARCH] | Feng, S., Tellaetxe-Abete, M., Zhang, Y., Peng, Y., Zhou, H., Dong, M., Larrea, E., Xue, L., Zhang, L., Koziol, M. J. | |
| 2024-07-24 | Large-scale genomic analysis of the domestic dog informs biological discovery [MINI-REVIEW] | Buckley, R. M., Ostrander, E. A. | |
| 2024-06-25 | A harmonized public resource of deeply sequenced diverse human genomes [RESOURCES] | Koenig, Z., Yohannes, M. T., Nkambule, L. L., Zhao, X., Goodrich, J. K., Kim, H. A., Wilson, M. W., Tiao, G., Hao, S. P., Sahakian, N., Chao, K. R., Walker, M. A., Lyu, Y., gnomAD Project Consortium, Rehm, H. L., Neale, B. M., Talkowski, M. E., Daly, M. J | |
| 2024-06-25 | Erratum: Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic [ERRATUM] | Shaw, J., Yu, Y. W. | |
| 2024-06-25 | Simulation of nanopore sequencing signal data with tunable parameters [METHODS] | Gamaarachchi, H., Ferguson, J. M., Samarakoon, H., Liyanage, K., Deveson, I. W. | |
| 2024-06-25 | Identifying genes within pathways in unannotated genomes with PaGeSearch [METHODS] | Won, S., Yu, J., Kim, H. | |
| 2024-06-25 | GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes [METHODS] | Bruna, T., Lomsadze, A., Borodovsky, M. | |
| 2024-06-25 | BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA [METHODS] | Gabriel, L., Bruna, T., Hoff, K. J., Ebel, M., Lomsadze, A., Borodovsky, M., Stanke, M. | |
| 2024-06-25 | Genome-wide profiles of H3K9me3, H3K27me3 modifications, and DNA methylation during diapause of Asian corn borer (Ostrinia furnacalis) [RESEARCH] | Lv, P., Yang, X., Zhao, X., Zhao, Z., Du, J. | |
| 2024-06-25 | Semiconservative transmission of DNA N6-adenine methylation in a unicellular eukaryote [RESEARCH] | Sheng, Y., Wang, Y., Yang, W., Wang, X. Q., Lu, J., Pan, B., Nan, B., Liu, Y., Ye, F., Li, C., Song, J., Dou, Y., Gao, S., Liu, Y. | |
| 2024-06-25 | Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary [RESEARCH] | Srivastav, S. P., Feschotte, C., Clark, A. G. | |
| 2024-06-25 | Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice [RESEARCH] | Boukas, L., Luperchio, T. R., Razi, A., Hansen, K. D., Bjornsson, H. T. | |
| 2024-06-25 | Machine learning identifies activation of RUNX/AP-1 as drivers of mesenchymal and fibrotic regulatory programs in gastric cancer [RESEARCH] | Razavi-Mohseni, M., Huang, W., Guo, Y. A., Shigaki, D., Ho, S. W. T., Tan, P., Skanderup, A. J., Beer, M. A. | |
| 2024-06-25 | Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy [RESEARCH] | Chen, L., Kong, X., Johnston, K. G., Mortazavi, A., Holmes, T. C., Tan, Z., Yokomori, K., Xu, X. | |
| 2024-06-25 | Toward telomere-to-telomere cat genomes for precision medicine and conservation biology [MINI-REVIEW] | Murphy, W. J., Harris, A. J. | |
| 2024-05-16 | A new framework for exploratory network mediator analysis in omics data [METHODS] | Cai, Q., Fu, Y., Lyu, C., Wang, Z., Rao, S., Alvarez, J. A., Bai, Y., Kang, J., Yu, T. | |
| 2024-05-16 | Probabilistic association of differentially expressed genes with cis-regulatory elements [METHODS] | Roberts, B. S., Anderson, A. G., Partridge, E. C., Cooper, G. M., Myers, R. M. | |
| 2024-05-16 | Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples [METHODS] | Ji, S., Zhu, T., Sethia, A., Wang, W. | |
| 2024-05-16 | Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a Drosophila knock-in tauopathy model [RESEARCH] | Bukhari, H., Nithianandam, V., Battaglia, R. A., Cicalo, A., Sarkar, S., Comjean, A., Hu, Y., Leventhal, M. J., Dong, X., Feany, M. B. | |
| 2024-05-16 | Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence [RESEARCH] | Ferguson, S., Jones, A., Murray, K., Andrew, R., Schwessinger, B., Borevitz, J. | |
| 2024-05-16 | Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy [RESEARCH] | Iyer, D. P., Moyon, L., Wittler, L., Cheng, C.-Y., Ringeling, F. R., Canzar, S., Marsico, A., Bulut-Karslioglu, A. | |
| 2024-05-16 | Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription [RESEARCH] | Keenan, C. R., Coughlan, H. D., Iannarella, N., Tapia del Fierro, A., Keniry, A., Johanson, T. M., Chan, W. F., Garnham, A. L., Whitehead, L. W., Blewitt, M. E., Smyth, G. K., Allan, R. S. | |
| 2024-05-16 | Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions [RESEARCH] | Joosten, S. E. P., Gregoricchio, S., Stelloo, S., Yapıcı, E., Huang, C.-C. F., Yavuz, K., Donaldson Collier, M., Morova, T., Altintas, U. B., Kim, Y., Canisius, S., Moelans, C. B., van Diest, P. J., Korkmaz, G., Lack, N. A., Vermeule | |
| 2024-05-16 | Ribosome decision graphs for the representation of eukaryotic RNA translation complexity [PERSPECTIVE] | Tierney, J. A. S., Swirski, M., Tjeldnes, H., Mudge, J. M., Kufel, J., Whiffin, N., Valen, E., Baranov, P. V. | |
| 2024-05-16 | Navigating the landscape of epitranscriptomics and host immunity [REVIEW] | Huang, E., Frydman, C., Xiao, X. | |
| 2024-04-26 | Corrigendum: A statistical learning method for simultaneous copy number estimation and subclone clustering with single-cell sequencing data [CORRIGENDUM] | Qin, F., Cai, G., Amos, C. I., Xiao, F. | |
| 2024-04-26 | Systematic mapping of TF-mediated cell fate changes by a pooled induction coupled with scRNA-seq and multi-omics approaches [METHODS] | Lee, M., Guo, Q., Kim, M., Choi, J., Segura, A., Genceroglu, A., LeBlanc, L., Ramirez, N., Jang, Y. J., Jang, Y., Lee, B.-K., Marcotte, E. M., Kim, J. | |
| 2024-04-26 | The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals [RESOURCES] | Schnitzler, C. E., Chang, E. S., Waletich, J., Quiroga-Artigas, G., Wong, W. Y., Nguyen, A.-D., Barreira, S. N., Doonan, L. B., Gonzalez, P., Koren, S., Gahan, J. M., Sanders, S. M., Bradshaw, B., DuBuc, T. Q., Febrimarsa, , de Jong, D., Nawrocki, E. P., | |
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